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Gene name
Human disease related genes
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UMAP gene cluster
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Gene name
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Other congenital disorders
Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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131 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACTA1
ENSSSCG00000010190
ENSG00000143632
Actin, alpha skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
1900.3
ACTC1
ENSSSCG00000004803
ENSG00000159251
Actin, alpha cardiac muscle 1
Tissue enriched
Detected in some
heart:
271.3
ACTG2
ENSSSCG00000008294
ENSG00000163017
Actin, gamma 2, smooth muscle, enteric
Tissue enriched
Detected in many
smooth muscle:
747.6
ACTN3
ENSSSCG00000038323
ENSG00000248746
Actinin alpha 3 (gene/pseudogene)
Tissue enriched
Detected in some
skeletal muscle:
250.4
AGL
ENSSSCG00000006872
ENSG00000162688
Amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase
Tissue enriched
Detected in all
skeletal muscle:
119.9
AK1
ENSSSCG00000005627
ENSG00000106992
Adenylate kinase isoenzyme 1
Tissue enriched
Detected in many
skeletal muscle:
215.4
AMPD1
ENSSSCG00000006754
ENSG00000116748
AMP deaminase 1
Tissue enriched
Detected in many
skeletal muscle:
107.7
ANKRD1
ENSSSCG00000010461
ENSG00000148677
Ankyrin repeat domain-containing protein 1
Tissue enriched
Detected in some
heart:
216.2
ANKRD2
ENSSSCG00000010522
ENSG00000165887
Ankyrin repeat domain 2
Tissue enriched
Detected in all
skeletal muscle:
79.2
ART1
ENSSSCG00000038255
ENSG00000129744
ADP-ribosyltransferase 1
Tissue enriched
Detected in some
skeletal muscle:
58.0
ASB5
ENSSSCG00000030395
ENSG00000164122
Ankyrin repeat and SOCS box containing 5
Tissue enriched
Detected in all
skeletal muscle:
107.3
ATP2A1
ENSSSCG00000007805
ENSG00000196296
Sarcoplasmic/endoplasmic reticulum calcium ATPase 1
Tissue enriched
Detected in some
skeletal muscle:
375.6
CA3
ENSSSCG00000006141
ENSG00000164879
Carbonic anhydrase 3
Tissue enriched
Detected in many
skeletal muscle:
324.2
CACNA1S
ENSSSCG00000024784
ENSG00000081248
Calcium voltage-gated channel subunit alpha1 S
Tissue enriched
Detected in some
skeletal muscle:
92.9
CACNG1
ENSSSCG00000017271
ENSG00000108878
Voltage-dependent calcium channel gamma-1 subunit
Tissue enriched
Detected in some
skeletal muscle:
85.3
CAPN3
ENSSSCG00000004728
ENSG00000092529
Calpain 3
Tissue enriched
Detected in many
skeletal muscle:
135.8
CASQ1
ENSSSCG00000006390
ENSG00000143318
Calsequestrin-1 precursor
Tissue enriched
Detected in some
skeletal muscle:
270.8
CASQ2
ENSSSCG00000006745
ENSG00000118729
Calsequestrin 2
Tissue enriched
Detected in many
heart:
100.4
CAVIN4
ENSSSCG00000037954
ENSG00000170681
Caveolae associated protein 4
Tissue enriched
Detected in some
skeletal muscle:
37.9
CKM
ENSSSCG00000036132
ENSG00000104879
Creatine kinase M-type
Tissue enriched
Detected in some
skeletal muscle:
470.7
CORO6
ENSSSCG00000017792
ENSG00000167549
Coronin 6
Tissue enriched
Detected in many
skeletal muscle:
101.5
DUSP13
ENSSSCG00000035105
ENSG00000079393
Dual specificity protein phosphatase 13
Tissue enriched
Detected in some
skeletal muscle:
54.0
ENO3
ENSSSCG00000017904
ENSG00000108515
Beta-enolase
Tissue enriched
Detected in many
skeletal muscle:
421.4
FHL3
ENSSSCG00000003644
ENSG00000183386
Four and a half LIM domains protein 3
Tissue enriched
Detected in many
skeletal muscle:
172.7
GCK
ENSSSCG00000016751
ENSG00000106633
Myosin regulatory light chain 2, atrial isoform
Tissue enriched
Detected in some
heart:
414.0
KCNA7
ENSSSCG00000003159
ENSG00000104848
Potassium voltage-gated channel subfamily A member 7
Tissue enriched
Detected in some
skeletal muscle:
38.1
KLHL40
ENSSSCG00000011286
ENSG00000157119
Kelch like family member 40
Tissue enriched
Detected in some
skeletal muscle:
49.0
KLHL41
ENSSSCG00000033049
ENSG00000239474
Kelch like family member 41
Tissue enriched
Detected in many
skeletal muscle:
159.2
LBX1
ENSSSCG00000022693
ENSG00000138136
Transcription factor LBX1
Tissue enriched
Detected in some
skeletal muscle:
36.0
LMOD3
ENSSSCG00000011508
ENSG00000163380
Leiomodin 3
Tissue enriched
Detected in some
skeletal muscle:
118.3
LRRC10
ENSSSCG00000036760
ENSG00000198812
Leucine rich repeat containing 10
Tissue enriched
Detected in single
heart:
48.8
MSS51
ENSSSCG00000010300
ENSG00000166343
MSS51 mitochondrial translational activator
Tissue enriched
Detected in all
skeletal muscle:
61.1
MYBPC1
ENSSSCG00000000866
ENSG00000196091
Myosin binding protein C, slow type
Tissue enriched
Detected in some
skeletal muscle:
331.7
MYBPC2
ENSSSCG00000003218
ENSG00000086967
Myosin binding protein C, fast type
Tissue enriched
Detected in some
skeletal muscle:
260.4
MYBPC3
ENSSSCG00000013236
ENSG00000134571
Myosin binding protein C, cardiac
Tissue enriched
Detected in some
heart:
207.4
MYF6
ENSSSCG00000026533
ENSG00000111046
Myogenic factor 6
Tissue enriched
Detected in some
skeletal muscle:
64.5
MYH2
ENSSSCG00000029441
ENSG00000125414
Myosin-2
Tissue enriched
Detected in some
skeletal muscle:
505.3
MYH4
ENSSSCG00000018003
ENSG00000264424
Myosin-4
Tissue enriched
Detected in some
skeletal muscle:
262.5
MYL1
ENSSSCG00000016157
ENSG00000168530
Myosin light chain 1/3, skeletal muscle isoform
Tissue enriched
Detected in some
skeletal muscle:
477.7
MYL4
ENSSSCG00000017307
ENSG00000198336
Myosin light chain 4
Tissue enriched
Detected in some
heart:
466.8
MYLK2
ENSSSCG00000007231
ENSG00000101306
Myosin light chain kinase 2
Tissue enriched
Detected in some
skeletal muscle:
151.7
MYLK3
ENSSSCG00000036874
ENSG00000140795
Myosin light chain kinase 3
Tissue enriched
Detected in some
heart:
59.0
MYLPF
ENSSSCG00000007799
ENSG00000180209
Myosin regulatory light chain 2, skeletal muscle isoform
Tissue enriched
Detected in some
skeletal muscle:
876.7
MYOT
ENSSSCG00000014324
ENSG00000120729
Myotilin
Tissue enriched
Detected in some
skeletal muscle:
267.8
MYOZ1
ENSSSCG00000010304
ENSG00000177791
Myozenin-1
Tissue enriched
Detected in many
skeletal muscle:
328.6
MYOZ3
ENSSSCG00000035729
ENSG00000164591
Myozenin-3
Tissue enriched
Detected in some
skeletal muscle:
137.5
MYZAP
ENSSSCG00000004598
ENSG00000263155
Myocardial zonula adherens protein
Tissue enriched
Detected in many
heart:
68.8
na
ENSSSCG00000002140
Tissue enriched
Detected in all
skeletal muscle:
55.1
na
ENSSSCG00000003444
Tissue enriched
Detected in single
heart:
1.8
na
ENSSSCG00000004096
Tissue enriched
Detected in some
skeletal muscle:
22.1
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